species:   Scscl
pid:       PID1741
parent:    Ssc-milR-217
paralog:   
locus:     NW_001820835.1:1063039-1063115
matures:   ['UAGGGCGACUUUAAGAGUCUCG', 'UAGGGUCUUCGGUACCUCCUAUA']
srr:       SRR12527895
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527895.cram NW_001820835.1:1063039-1063115

4 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

        *************************            **************************      
AUCGGUCUGGUAGGGCGACUUUAAGAGUCUCGGUGAUGGUAAUCUCCUUAGGGUCUUCGGUACCUCCUAUAGCGAUG
((((.(...((((((.((((..((((.(((.((.(((....))).))..))).)))).))).).))))))).)))).
----------UAGGGCGACUUUAAGAGUCUCG--------------------------------------------- l=22 a=0 c
------------------------------------------------UAGGGUCUUCGGUACCUCCUAUA------ l=23 a=0 c*
----------UAGGGCGACUUUAAGAGUCUCGG-------------------------------------------- l=23 a=1 ma
-----------------------------------------------UUAGGGUCUUCGGUACCUCCUAUA------ l=24 a=0 ma*

----------UAGGGCGACUUUAAGAGUCU----------------------------------------------- l=20 a=1 
----------UAGGGCGACUUUAAGAGUCUCGG-------------------------------------------- l=23 a=1 (ma)

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
